Wiktor Koźmiński's NMR group

Biological and Chemical Research Centre, University of Warsaw

  • Increase font size
  • Default font size
  • Decrease font size

Saurabh Saxena

Print

alt

 

 

Academic Career:
 
PhD student in Chemistry, April 2011-Dec 2016
University of Warsaw, Warsaw, Poland
 
Graduate Student in Chemistry, Aug’07-May’08
University of Miami, FL, USA, Major: Chemistry, Fall’07 + Spring’08, Cumulative GPA: 3.11 (on 4 point scale)
 
Master of Science in Chemistry, July’05-Jun’07
Indian Institute of Technology (IIT), Roorkee, India, Major: Chemistry, CGPA: 7.75 (on 10 points scale)
 
Bachelor of Science (Hons.) in Chemistry, July’02-Jun’05 
University of Delhi, India, Major: Chemistry, Score Percentage: 75.11
 
 
Stipends and Grants:
 
Nov 2013 - Sept 2014, KNOW scholarship,  Poland
March 2011 - Dec 2014, Ph. D. stipend by Foundation for Polish Science, Poland
Aug 2012 - July 2013, Computational grant by ICM, University of Warsaw, Poland
Aug 2007 - Jul 2008, MS Scholarship by University of Miami, USA
 
 
Scientific Publications:
 

1. High resolution 4D HPCH experiment for sequential assignment of 13C-labeled RNAs via phosphodiester backbone. S. Saxena, J. Stanek, M. Cevec, J. Plavec, W. Koźmiński. 
Journal of Biomolecular NMR (submitted)


2. Application of high dimensional experiments in NMR. M. Nowakowski, , S. Saxena, J Stanek, S Żerko, W Koźmiński.  Progress in Nuclear Magnetic Resonance Spectroscopy, 2015 (article in press, doi:10.1016/j.pnmrs.2015.07.001)


3.Non-uniform sampling methods in NMR data acquisition. W. Kozminski, S. Saxena, S. Zerko. Encyclopedia of Spectroscopy and Spectrometry 3rd Edition, Elsevier -(Book Chapter-Accepted)


4. C4'/H4' selective, non-uniformly sampled 4D HC(P)CH experiment for sequential assignments of 13C-labeled RNAs. S. Saxena, J. Stanek, M. Cevec, J. Plavec, W. Koźmiński. 
Journal of Biomolecular NMR, 2013, 60 (2), 91-98.


5. 1H, 13C and 15N resonance assignments of human Osteopontin. G. Platzer, S. Żerko, S. Saxena, W. Koźmiński, R Konrat. Biomolecular NMR assignments, 2014 (accepted, in press).
6. Probing Local Backbone Geometries in Intrinsically Disordered Proteins by Cross‐Correlated NMR Relaxation. J. Stanek, S. Saxena, L. Geist, R. Konrat, W. Koźmiński. 
Angew. Chem. Int. Ed. 2013, 52 (17), 4604-4606.


7. Selective diagonal-free 13C,13C-edited aliphatic-aromatic NOESY experiment with non-uniform sampling. J. Stanek, M. Nowakowski, S. Saxena, K. Ruszczyńska-Bartnik, A. Ejchart, W. Koźmiński. Journal of Biomolecular NMR, 2013, 56 (3), 217-226.


8. Protonation-dependent conformational variability of intrinsically disordered proteins. L. Geist, M. A. Henen, S. Haiderer, T. C. Schwarz, D. Kurzbach, A. Zawadzka-Kazimierczuk, S. Saxena, S. Żerko, W.Koźmiński, D. Hinderberger, R. Konrat. Protein Science, 2013, 22 (9), 1196-1205.


9. Backbone and partial side chain assignment of the microtubule binding domain of the MAP1B light chain. Z Orbán-Németh, MA Henen, L Geist, S Żerko, S Saxena, J Stanek, W Koźmiński, F Propst, R Konra Biomolecular NMR assignments, 2013, 8 (1), 123-127


10. 1H, 13C, and 15N backbone and side chain resonance assignments of the C-terminal DNA binding and dimerization domain of v-Myc. G. Kızılsavas, S. Saxena, S. Żerko, W. Koźmiński, K. Bister, R. Konrat. Biomolecular NMR assignments, 2013, 7 (2), 321-324.


11. 1H, 13C and 15N resonance assignments of human BASP1. L Geist, A Zawadzka-Kazimierczuk, S. Saxena, S. Żerko, W. Koźmiński, R. Konrat. Biomolecular NMR assignments, 2013, 7 (2), 315-319

 
 
Participation in Conferences:
 

Oral presentations
1. Multidimensional NMR for sequential assignment of intrinsically disordered Proteins. New Frontiers in Structural Biology, Poznan, Poland, 19.01.12 to 20.01.12

2. Protein backbone assignment from high dimensional spectra Course „Acquisition and processing of sparsely sampled NMR data”, Warsaw, Poland, 25.04.12 to 28.04.12

3. Multidimensional NMR for sequential assignment of intrinsically disordered Proteins. 2nd EASTNMR Young Investigators' Meeting, Bratislava, Slovakia, 16.05.12 to 18.05.12

4. Multidimensional NMR experiments for the sequential analysis of intrinsically disordered proteins CEUM-2012, Golden Sands, Bulgaria, 16.09.12 to 19.09.12

5. Resonance Assignment of Intrinsically Disordered Proteins Using a Set of Multidimensional (5D) NMR Experiments, ICHO-2012, Warsaw, Poland, 26.09.12 to 28.09.12

6. Diagonal free 4D trosy-noesy-trosy NMR experiments for structural elucidation of ribonucliec acids, Od MPD do KNOW, Rawa Mazowiecka, Poland, 28.09.2013

7. High-dimensional NMR experiment for sequential assignment in 13C labeled RNAs, MMCE 2015, Krynica-Zdroj, Poland, 25.02.15-01.03.15


Poster Presentations
1. Sequential analysis of intrinsically disordered proteins using set of multidimensional (5D) NMR experiments acquired with non-uniform sampling EUROMAR-2012, Dublin, Ireland, 01.07.12 to 05.07.12

2. Simulation aided optimization of pulse sequences for multidimensional NMR experiments. Magnetic Moments in Central Europe (MMCE 2013), Semmering, Austria , 27.02.13 to 03.03.13

3. Simulation aided designing of new band-selective diagonal-free 4D 13C,13C-edited aliphatic-aromatic NOESY experiment, EUROMAR 2013, Crete, Greece , 30.06.13 to 05.07.13

4. Selective non-uniformly sampled 4D H4'C4'(P)C4'H4' experiment for sequential assignments in 13C labeled RNAs. 4th AUM Bio-NMR, Warsaw, Poland , 05.05.14 to 08.05.14

5. Novel 4D experiment with non-uniform sampling for sequential assignments in 13C labeled RNAs. Ampere NMR School, Zakopane, Poland, 22.06.14 to 28.06.14.

6. Novel 4D experiment with non-uniform sampling for sequential assignments in 13C labeled RNAs. EUROMAR-2014, Zurich, Switzerland, 29.06.14 to 03.07.14.

7. C4'/H4' selective, non-uniformly sampled 4D HC(P)CH experiment for sequential assignments of 13C-labeled RNAs. EMBO Practical Course 2014, Joachimsthal, Germany, 10.08.14 to 15.08.14.

8. High-dimensional NMR experiment for sequential assignment in 13C labeled RNAs. MMCE 2015, Krynica-Zdroj, Poland, 25.02.15 to 01.03.15.

9. 4D NMR for sequential assignment of 13C labeled RNAs. Summer School on Nuclear Spin Hyperpolarisation Techniques (EU-COST) , Marwell, UK, 21.06.15 to 26.06.15.

10. 4D NMR for RNAs. EMBO Young Scientist Forum, Warsaw, Poland, 02.07.15 to 03.07.15.

11. Sequential assignment of 13C-labeled RNAs via phosphate backbone: 1H-31P correlation with high resolution 4D NMR. EUROMAR-2015, Prague, Czech Republic, 05.07.15 to 10.07.15.

 

Research Grants received:
1. Calculation of magnetic properties of small to moderate size proteins for designing new pulse sequences for multidimensional NMR experiments. Project Number: G50-11, Interdisciplinary Centre for Mathematical and Computational Modelling (ICM), UW (2012-2013)
2. New high dimensional NMR spectroscopy experiments for three dimensional structure elucidation of nucleic acids. (August 2014) PRELUDIUM project. 2013/11/N/ST4/01827 (NCN), Poland
3. DSM doctoral student project grant by Faculty of Chemistry, University of Warsaw, Poland (2014-2015)
4. DSM doctoral students project grant by Faculty of Chemistry, University of Warsaw, Poland. (2012-2013)
5. BST doctoral students project grant by Faculty of Chemistry, University of Warsaw, Poland (2011-2012)

 
 
Participation in Grants:
 
1. Project TEAM Foundation for Polish Science „Towards new applications of NMR spectroscopy in chemical and biomolecular structural studies”, (2010-2014), Project Manager on the Polish side: W. Koźmiński
 
2. EAST-NMR, “Enhancing Access and Services To East European users towards an efficient and coordinated pan-European pool of NMR capacities to enable global collaborative research and boost technological advancements”. Combination of a Collaborative Project & Coordination and Support Action. (Proj. 228461) FP7-Infrastructure project funded by the European Commission (2009-2013), Project Manager on the Polish side: W. Koźmiński
 
3. Bio-NMR, “NMR for Structural Biology ", FP7 project no: 261863. FP7- Infrastructure project funded by the European Commission (2010-2014), Project Manager on the Polish side: W. Koźmiński
 
As a part of Bio-NMR project (pt. 3 above) I conducted the following trainings:
User Training Course: Acquisition and processing of sparsely sampled NMR data, April 25 - 28, 2012, Warsaw, Poland
 
 
Travel Grants received:

1. EUROMAR 2015, Prague, Czech Republic
2. EUROMAR 2014, ETH-Zurich, Switzerland
3. AMPERE NMR School 2014, Zakopane, Poland
4. EMBO Course Multidimensional NMR in structural biology, 2015, Joachimsthal, Germany

Best Poster award:
4th AUM Bio-NMR-2014, Warsaw

 
Workshop and courses:
• Workshop at National Council of Educational Research and Training (NCERT), NCERT, New Delhi, India, January 2004
• Developed the semi-micro scale laboratory apparatus kit for chemistry labs
• Fabricated microcontroller based pH meter, colorimeter and chrono-thermometer
 






Banner
Banner
Banner

Conferences organized

by us:


 

euromar 2017 logo

 


 

mmcebanner3

 


 

AUM4

 


We use cookies to improve our website and your experience when using it. Cookies used for the essential operation of the site have already been set.

I accept cookies from this site.