Wiktor Koźmiński's NMR group

Biological and Chemical Research Centre, University of Warsaw

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Jan Stanek

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List of publications:

  1. Jan Stanek, Wiktor Koźmiński, Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets, Journal of Biomolecular NMR 47 (2010) 65-77
  2. Krzysztof Kazimierczuk, Jan Stanek, Anna Zawadzka-Kazimierczuk and Wiktor Koźmiński, Random sampling in multidimensional NMR spectroscopy, Progress in Nuclear Magnetic Resonance Spectroscopy 57 (2010) 420-434
  3. Jan Stanek, Rafał Augustyniak, Wiktor Koźmiński, Suppression of sampling artefacts in high-resolution four-dimensional NMR spectra using signal separation algorithm, Journal of Magnetic Resonance 214 (2012) 91-102
  4. Dmytro Lozhko, Jan Stanek, Krzysztof Kazimierczuk, Anna Zawadzka-Kazimierczuk, Wiktor Koźmiński, Igor Zhukov, Alexander Kornelyuk, 1H, 13C, and 15N chemical shifts assignments for human endothelial monocyte-activating polypeptide EMAP II, Biomolecular NMR Assignments 7 (2013) 25-29
  5. Krzysztof Kazimierczuk, Maria Misiak, Jan Stanek, Anna Zawadzka-Kazimierczuk and Wiktor Koźmiński, Generalized Fourier transform for non-uniform sampled data, Topics in Current Chemistry 316 (2012) 79–124
  6. Wolfgang Bermel, Ivano Bertini, Isabella C. Felli, Leonardo Gonnelli, Wiktor Koźmiński, Alessandro Piai, Roberta Pierattelli, Jan Stanek, Speeding up sequence specific assignment of IDPs, Journal of Biomolecular NMR 53 (2012) 293-301
  7. Z. Orbán-Németh, M. A. Henen, L. Geist, S. Żerko, S. Saxena, J. Stanek, W. Koźmiński, W., F. Propst, R. Konrat, Backbone and partial side chain assignment of the microtubule binding domain of the MAP1B light chain  Biomol. NMR Assigm. Article in Press.
  8. Jan Stanek, Saurabh Saxena, Leonhard Geist, Robert Konrat, Wiktor Koźmiński, Probing of Local Backbone Geometries in Intrinsically Disordered Proteins by Cross-Correlated NMR Relaxation, Angewandte Chemie International Edition52 (2013) 5404-06
  9. Jan Stanek, Michał Nowakowski, Saurabh Saxena, Katarzyna Ruszczynska-Bartnik, Andrzej Ejchart, Wiktor Koźminski, Selective diagonal-free 13C,13C-edited aliphatic-aromatic NOESY experiment with non-uniform sampling, Journal of Biomolecular NMR 56 (2013) 217-226
  10. K. Kazimierczuk, J. Stanek, A. Zawadzka-Kazimierczuk, W. Koźmiński, High-Dimensional NMR Spectra for Structural Studies of Biomolecules, ChemPhysChem 14 (2013) 3015-25
  11. J. Stanek, P. Podbevsek, W. Koźmiński, J. Plavec, M. Cevec, 4D Non-uniformly sampled C,C-NOESY experiment for sequential assignment of 13C,15N-labeled RNAs, Journal of Biomolecular NMR 57 (2013) 1-9
     

Grants:

  1. N301 071 31/2159, Development of New NMR methods for structural research on proteins, 2006-2009, Project Manager: W. Koźmiński
  2. Scientific Network: New applications of Nuclear Magnetic Resonance Spectroscopy In chemistry, biology and medicine, 2008. (Project Manager at Faculty of Chemistry UW: W. Koźmiński)
  3. EAST-NMR, “Enhancing Access and Services To East European users towards an efficient and coordinated pan-European pool of NMR capacities to enable global collaborative research and boost technological advancements”. Combination of a Collaborative Project & Coordination and Support Action. (Proj. 228461) FP7-Infrastructure project funded by the European Commission (2009-2013), Project Manager on the Polish side: W. Koźmiński
  4. New applications of randomly sampled NMR data sets with improved resolution, Polish-Slovenian bilateral cooperation, 2010-2011 (National Institute of Chemistry Ljubljana), Project Manager on the Polish side: W. Koźmiński
  5. Bio-NMR, “NMR for Structural Biology ", FP7 project no: 261863. FP7- Infrastructure project funded by the European Commission (2010-2014), Project Manager on the Polish side: W. Koźmiński
  6. Grant No. 2012/05/N/ST4/01120 (PRELUDIUM) funded by Polish National Science Centre. 50,000 PLN (director)
  7. Agilent Technologies Applications and Core Technology University Research grant ID ...
  8. Iuventus Plus, Grant no. IP2012 057872 by Polish Ministry of Science and Higher Education: "Development of acquisition and reconstruction methods for non-uniformly sampled diagonal-free four-dimensional NOESY spectra for efficient structural analysis of proteins and nucleic acids by NMR" (2013-2014). 132,000 PLN (director)

Academic career

  • Since 2008 Ph. D. studies in physical chemistry at Faculty of Chemistry, University of Warsaw (Ph. D. opened Dec 22, 2010)
  • September 2008 Graduation with honors from Faculty of Chemistry
  • 2003-2008 Undergraduate studies at the College of Inter-faculty Individual Studies in Mathematics and Natural Sciences, Warsaw University
Practice:
  • Jun.-Sep. 2008 Practice at the HPC Centre of Interdisciplinary Centre for Mathematical and Computational Modeling, University of Warsaw,  Project “Optimization of Computations on multi-core and multiprocessor architectures”
  • Aug.-Sep. 2007 Research visit in the Centre of Theoretical and Computational Chemistry (Prof. T. Helgaker), University of Oslo, Norway

 

Research visits:

  1. May 6-17, 2011, National Institute of Chemistry Lubljana, Slovenia (the group of prof. J. Plavec) – visit In the framework of bilateral Polish-Slovenian co-operation
  2. Oct 17-21, 2011, National Centre for Biological Research, Masaryk University, Brno, Czech Republic – visit In the framework of young scientist exchange (twinning) in the EAST-NMR project

Stipends:

  • 2012/13 Ph. D. scholarship of Polish Ministry of Science and Higher Education
  • Oct 2008-Oct 2012 Ph. D. scholarship
  • Oct 2011-Jun 2012 Mazowian Ph. D. Scholarship by the Marshal of the Mazovia province
  • Oct 2008-Apr 2009 Mazowian Ph. D. Scholarship by the Marshal of the Mazovia province
  • 2008-2009 Piotr Wrona scientific stipend of Foundation of Warsaw University

Awards:

  • Winner of Young Scientists' Contest at the VIth Symposium on Nuclear Magnetic Resonance in Chemistry, Physics and Biological Sciences, Sep 22-24, 2010, IOCh PAS, Warsaw. Best oral communication: Jan Stanek, W. Koźmiński, „Iterative Algorithm for Artifact Suppression in Sparsely Sampled Multidimensional NMR Spectra”
  • Best Poster Award at Magnetic Moments In Central Europe, Feb 11-15, 2009, Otocec (Slovenia)
  • Poster Award at the 3rd Annual East-NMR User Meeting, Nov 13-16, 2012, Lasko, Slovenia - Suraj Manrao Science Fund Award

 

 






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