Wiktor Koźmiński's NMR group

Biological and Chemical Research Centre, University of Warsaw

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Szymon Żerko

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Education:

2012 - ...   Ph.D Student, Chemistry Department at Warsaw University
2010 - 2012 M.Sc. in Chemistry, Chemistry Department at Warsaw University. Thesis: 7D NMR Spectra of Proteins
2007 - 2010 B.Sc. in Chemistry, Chemistry Department at Warsaw University. Thesis: Monte Carlo Simulations of Adsorbed Cyclic Polymer Chains
2005 - 2011 M.Eng. in Automatic Control and Robotics, Faculty of Mechatronics, Warsaw University of Technology (thesis not submited)
2002 - 2005 XIII High School, Szczecin

 

More important papers:

  1. Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein, S. Żerko, P. Byrski, P. Włodarczyk-Pruszyński, M. Górka, K. Ledolter, E. Masliah, R. Konrat W. Koźmiński, J. Biomol. NMR , 65, 193-203 (2016).
  2. Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins, S. Żerko, W. Koźmiński, J. Biomol. NMR , 63, 283-290 (2015).
  3. Percolation in two-dimensional systems containing cyclic chains, S. Żerko, P. Polanowski, A. Sikorski, Soft Matter 8, 973-979, (2012).

Less important papers:

      1. Structure and Dynamics of the Huntingtin Exon-1 N-Terminus: A Solution NMR Perspective, M. Baias, P. E. S. Smith, K. Shen, L. A. Joachimiak, S. Żerko, W. Koźmiński, J. Frydman, L. Frydman, J. Am. Chem. Soc., 139 (3), 1168-1176, (2017).
      2. 1H, 15N, 13C resonance assignment of human GAP43, A. G. Flamm, S. Żerko, A. Zawadzka-Kazimierczuk, W. Koźmiński, R. Konrat, N. Coudevylle Biomol. NMR Assigm. 10(1), 171-174, (2016) .
      3. Biochemical and structural characterization of the interaction between the Siderocalin NGAL/LCN2 and the N-terminal domain of its endocytic receptor SLC22A17, A. Cabedo Martinez, K. Weinhaupl, W. Lee, N. A. Wolff, B. Storch, S. Żerko, R. Konrat, W. Koźmiński, K. Breuker, F. Thévenod, N. Coudevylle J. Biol. Chem.  291, 2917-2930, (2016).
      4. 1H, 15N, 13C resonance assignment of human osteopontin, G. Platzer, S. Żerko, S. Saxena, W. Koźmiński, R. Konrat, Biomol. NMR Assigm. 9(2) , 289-292, (2015) .
      5. Backbone and partial side chain assignment of the microtubule binding domain of the MAP1B light chain, Z. Orbán-Németh, M. A. Henen, L. Geist, S. Żerko, S. Saxena, J. Stanek, W. Koźmiński, W., F. Propst, R. Konrat, Biomol. NMR Assigm. 8 (1), 123-127, (2014).
      6. Protonation-dependent conformational variability of intrinsically disordered proteins, L. Geist, M. A. Henen, S. Haiderer, T. C. Schwarz, D. Kurzbach, A. Zawadzka-Kazimierczuk, S. Saxena, S. Żerko, W. Koźmiński, D. Hinderberger, R. Konrat, Protein Science, 22 (9), 1196-1205 (2013).
      7. 1H, 13C and 15N resonance assignments of human BASP1, L. Geist, A. Zawadzka-Kazimierczuk, S. Saxena, S. Żerko, W. Koźmiński, R. Konrat, Biomol. NMR Assigm. 7 (2), 315-319, (2013).
      8. 1H, 13C, and 15N backbone and side chain resonance assignments of the C-terminal DNA binding and dimerization domain of v-Myc, G. Kizilsavaş, S. Saxena, S. Żerko, W. Koźmiński, K. Bister, R. Konrat, Biomol. NMR Assigm. 7 (2), 321-324, (2013).
      9. Note: Percolation in two-dimensional flexible chains systems, M. Pawłowska, S. Żerko, A. Sikorski, J. Chem. Phys. 136 (4), 046101, (2012).
      10. The structure of percolated polymer systems: A computer simulation study, A. Sikorski, P. Polanowski, P. Adamczyk, S. Żerko, J. Mol. Model. 17 (9), 2209-2215, (2011).
      11. The Structure of Branched Polymer Chains Adsorbed on a Patterned Surface, A. Sikorski, S. Żerko, Mol. Cryst. Liq. Cryst. 547 (1), 108-115, (2010).

Reviews:

    1. Applications of high dimensionality experiments to biomolecular NMR, M. Nowakowski, S. Saxena, J. Stanek, S. Żerko, W. Koźmiński, Prog. Nucl. Magn. Reson. Sp. 90-91, 49-73 (2015).
    2. Nonuniform Sampling Methods in NMR Data Acquisition, W. Koźmiński S. Saxena, S. Żerko, Encyclopedia of Spectroscopy and Spectrometry (Third Edition), 418-422 (2016).
 






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